Spring 2013
Principles of Long Polymerase Chain Reaction (PCR)
BIOSCI 37: 1 unit, M1-Lec (23493) and M1-Lab (23494)
Section I: Saturdays, 9:00 - 6:05pm, February 23rd through March 16th
Section II: Saturdays, 9:00 - 6:05pm, TBA

No prerequisites required (Graded or P/NP).

Theoretical and practical methodology for the use of the polymerase chain reaction (PCR): Strategies for optimizing long-PCR performance including amplification of long fragments of DNA.





Summer 2013
Good Laboratory Practices in Genomics
BIOSC 32: 1 unit, .5 hours lecture, 1.5 hours laboratory (GR)
Section I: 30918 Lab 09:00-12:50, Lab 01:30-05:45 PM SSU, 06/29/2013 - 07/07/2013
Recommended preparation: Biol 10, and CIS 200 or 205
Corequisite: BIOSC 13 (Research Design)

Introduction to good laboratory practices in genomics: EPA and FDA regulatory protocols and standard operating procedures for designing experiments; recording observations, analyzing and reporting results; safety, instrumentation, and equipment maintenance; and documenting and presenting project/experiment results.



Sequence Analysis Using MacVector
BIOSC 61: 1 unit, 1 hour lecture
Section I: 31192 Lec 09:00-12:20, 01:00-05:50 SSU
07/13/2013 - 07/14/2013 Meets at 860 Atlantic Ave., Alameda
Recommended preparation: CIS 1
Prerequisites: BIOSC 38, 40, AND 41*
* The prereqs are not yet available. Please contact us for add codes if you are interested in the course.

Download [PDF] this form for Bob to sign to skip the prereqs.

Proficiency in using MacVector software: Mining GenBank and preparation of GenBank files, clustal alignments, gene annotation, and frame orientation of protein-coding genes.





Fall 2013
Genomics Theory
BIOSC 30: 4 units. 3 hours lecture, 3 hours laboratory
43614 Lec 02:00-4:50pm Friday
43615 Lab 09:00-11:50am Saturday
Prerequisite: Biol 2, 3, 4, 10 or 20A

Introduction to genetics and genomic technologies: Principles of genetics and data collection (DNA and RNA structure, mitochondrial DNA, nucleic acid replication, protein synthesis, mitosis-meiosis, Mendelian principles, mutation, molecular character alignment, evolution and phylogenetic reconstruction), combined with data handling (bioinformatics mining using GenBank data), and scientific writing; includes guest speakers and on-site tours of genomics institutions and labs.

DNA Shearing Techniques for Shotgun Sequencing in Genomics
BIOSC 40: 1 units, .5 hours lecture, 1.5 hours laboratory
43618 Lec 01:00-1:30pm Friday
43619 Lab 01:30-2:45pm Friday

Shotgun sequencing and techniques using Covaris and the Hydroshear in DNA preparation.

Sequence Analysis Using MacVector
BIOSC 61: 1 unit, 1 hour lecture
43620 Lec 06:00-8:50pm Friday
08/30/2013 - 10/4/2013 Meets at 860 Atlantic Ave., Alameda
Recommended preparation: CIS 1
Prerequisites: BIOSC 38, 40, AND 41*
* The prereqs are not yet available. Please contact us for add codes if you are interested in the course.

Download [PDF] this form for Bob to sign to skip the prereqs.

Proficiency in using MacVector software: Mining GenBank and preparation of GenBank files, clustal alignments, gene annotation, and frame orientation of protein-coding genes.





Methodologies in Phylogenetics Using PAUP
BIOSC 62: 1 unit, 1 hour lecture
43621 Lec 06:00-8:50pm Friday
10/11/2013 - 11/15/2013 Meets at 860 Atlantic Ave., Alameda

Introduction to PAUP software: Character vs. character states, parsimony, distance and the methods, shared ancestry vs. homoplasy (reversals vs. parallelisms).